SrasV1, Main, Exploration, bibRecord, 004643

Sequence Analysis and Structural Prediction of the Severe Acute Respiratory Syndrome Coronavirus nsp5

Identifieur interne : 004643 ( Main/Exploration ); précédent : 004642; suivant : 004644

Sequence Analysis and Structural Prediction of the Severe Acute Respiratory Syndrome Coronavirus nsp5

Auteurs : Jia-Hai Lu [République populaire de Chine] ; Ding-Mei Zhang [République populaire de Chine] ; Guo-Ling Wang [République populaire de Chine] ; Zhong-Min Guo [République populaire de Chine] ; Juan Li [République populaire de Chine] ; Bing-Yan Tan [République populaire de Chine] ; Li-Ping Ou-Yang [République populaire de Chine] ; Wen-Hua Ling [République populaire de Chine] ; Xin-Bing Yu [République populaire de Chine] ; Nan-Shan Zhong [République populaire de Chine]

Source :

Acta Biochimica et Biophysica Sinica [ 1672-9145 ] ; 2005.

RBID : PMC:7110076

Descripteurs français

KwdFr :
- Adulte d'âge moyen, Animaux, Cellules COS, Femelle, Humains, Plasmides (génétique), Protéines virales non structurales (), Protéines virales non structurales (biosynthèse), RT-PCR, Syndrome respiratoire aigu sévère (virologie), Séquence d'acides aminés, Virus du SRAS (génétique).
MESH :
- biosynthèse : Protéines virales non structurales.
- génétique : Plasmides, Virus du SRAS.
- virologie : Syndrome respiratoire aigu sévère.
- Adulte d'âge moyen, Animaux, Cellules COS, Femelle, Humains, Protéines virales non structurales, RT-PCR, Séquence d'acides aminés.

English descriptors

KwdEn :
- Amino Acid Sequence, Animals, COS Cells, Chlorocebus aethiops, Female, Humans, Middle Aged, Plasmids (genetics), Reverse Transcriptase Polymerase Chain Reaction, SARS Virus (genetics), Severe Acute Respiratory Syndrome (virology), Viral Nonstructural Proteins (biosynthesis), Viral Nonstructural Proteins (chemistry).
MESH :
- chemical , biosynthesis : Viral Nonstructural Proteins.
- chemical , chemistry : Viral Nonstructural Proteins.
- genetics : Plasmids, SARS Virus.
- virology : Severe Acute Respiratory Syndrome.
- Amino Acid Sequence, Animals, COS Cells, Chlorocebus aethiops, Female, Humans, Middle Aged, Reverse Transcriptase Polymerase Chain Reaction.

Abstract

The non-structural proteins (nsp or replicase proteins) of coronaviruses are relatively conserved and can be effective targets for drugs. Few studies have been conducted into the function of the severe acute respiratory syndrome coronavirus (SARS-CoV) nsp5. In this study, bioinformatics methods were employed to predict the secondary structure and construct 3-D models of the SARS-CoV GD strain nsp5. Sequencing and sequential comparison was performed to analyze the mutation trend of the polymerase nsp5 gene during the epidemic process using a nucleotide-nucleotide basic local alignment search tool (BLASTN) and a protein-protein basic local alignment search tool (BLASTP). The results indicated that the nsp5 gene was steady during the epidemic process and the protein was homologous with other coronavirus nsp5 proteins. The protein encoded by the nsp5 gene was expressed in COS-7 cells and analyzed by sodium dodecylsulfate-polyacrylamide gel electrophoresis (SDS-PAGE). This study provided the foundation for further exploration of the protein's biological function, and contributed to the search for anti-SARS-CoV drugs.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7110076

DOI: 10.1111/j.1745-7270.2005.00066.x
PubMed: 15999208
PubMed Central: 7110076

Affiliations:

République populaire de Chine

Le document en format XML

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<author><name sortKey="Zhong, Nan Shan" sort="Zhong, Nan Shan" uniqKey="Zhong N" first="Nan-Shan" last="Zhong">Nan-Shan Zhong</name>
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<term>Humans</term>
<term>Middle Aged</term>
<term>Plasmids (genetics)</term>
<term>Reverse Transcriptase Polymerase Chain Reaction</term>
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<front><div type="abstract" xml:lang="en"><title>Abstract</title>
<p>The non-structural proteins (nsp or replicase proteins) of coronaviruses are relatively conserved and can be effective targets for drugs. Few studies have been conducted into the function of the severe acute respiratory syndrome coronavirus (SARS-CoV) nsp5. In this study, bioinformatics methods were employed to predict the secondary structure and construct 3-D models of the SARS-CoV GD strain nsp5. Sequencing and sequential comparison was performed to analyze the mutation trend of the polymerase nsp5 gene during the epidemic process using a nucleotide-nucleotide basic local alignment search tool (BLASTN) and a protein-protein basic local alignment search tool (BLASTP). The results indicated that the nsp5 gene was steady during the epidemic process and the protein was homologous with other coronavirus nsp5 proteins. The protein encoded by the nsp5 gene was expressed in COS-7 cells and analyzed by sodium dodecylsulfate-polyacrylamide gel electrophoresis (SDS-PAGE). This study provided the foundation for further exploration of the protein's biological function, and contributed to the search for anti-SARS-CoV drugs.</p>
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<name sortKey="Ling, Wen Hua" sort="Ling, Wen Hua" uniqKey="Ling W" first="Wen-Hua" last="Ling">Wen-Hua Ling</name>
<name sortKey="Ou Yang, Li Ping" sort="Ou Yang, Li Ping" uniqKey="Ou Yang L" first="Li-Ping" last="Ou-Yang">Li-Ping Ou-Yang</name>
<name sortKey="Tan, Bing Yan" sort="Tan, Bing Yan" uniqKey="Tan B" first="Bing-Yan" last="Tan">Bing-Yan Tan</name>
<name sortKey="Wang, Guo Ling" sort="Wang, Guo Ling" uniqKey="Wang G" first="Guo-Ling" last="Wang">Guo-Ling Wang</name>
<name sortKey="Yu, Xin Bing" sort="Yu, Xin Bing" uniqKey="Yu X" first="Xin-Bing" last="Yu">Xin-Bing Yu</name>
<name sortKey="Zhang, Ding Mei" sort="Zhang, Ding Mei" uniqKey="Zhang D" first="Ding-Mei" last="Zhang">Ding-Mei Zhang</name>
<name sortKey="Zhong, Nan Shan" sort="Zhong, Nan Shan" uniqKey="Zhong N" first="Nan-Shan" last="Zhong">Nan-Shan Zhong</name>
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Sequence Analysis and Structural Prediction of the Severe Acute Respiratory Syndrome Coronavirus nsp5

Sequence Analysis and Structural Prediction of the Severe Acute Respiratory Syndrome Coronavirus nsp5

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

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